Basic Information
Locus ID:
BH07.2266
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
transposition, RNA-mediated
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 30123164 | 30136649 | + | BH07.2266 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.68 | 251,501.84 Da | 46.23 | 73.40 | -0.59 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00303 | retropepsin_like | 709 | 786 | 7.83412E-8 | - |
| CDD | cd09279 | RNase_HI_like | 1303 | 1427 | 6.57803E-42 | - |
| CDD | cd01647 | RT_LTR | 961 | 1141 | 1.92225E-75 | - |
| Pfam | PF06273 | Plant specific eukaryotic initiation factor 4B | 1782 | 2251 | 9.1E-156 | IPR010433 |
| Pfam | PF17919 | RNase H-like domain found in reverse transcriptase | 1206 | 1274 | 3.9E-15 | IPR041577 |
| Pfam | PF13456 | Reverse transcriptase-like | 1307 | 1426 | 1.1E-21 | IPR002156 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 979 | 1141 | 2.6E-20 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 921 | 1416 | 3.67E-115 | IPR043502 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1579 | 1685 | 2.28E-17 | IPR012337 |
| SUPERFAMILY | SSF50630 | Acid proteases | 707 | 785 | 9.0E-5 | IPR021109 |
| Gene3D | G3DSA:3.30.420.10 | - | 1629 | 1715 | 2.3E-14 | IPR036397 |
| Gene3D | G3DSA:3.30.70.270 | - | 1151 | 1234 | 2.3E-19 | IPR043128 |
| Gene3D | G3DSA:3.10.10.10 | HIV Type 1 Reverse Transcriptase, subunit A, domain 1 | 922 | 1066 | 1.3E-58 | - |
| Gene3D | G3DSA:3.30.420.10 | - | 1573 | 1628 | 5.5E-9 | IPR036397 |
| Gene3D | G3DSA:3.10.20.370 | - | 1235 | 1278 | 1.7E-6 | - |
| Gene3D | G3DSA:3.30.70.270 | - | 1004 | 1141 | 1.3E-58 | IPR043128 |
| Gene3D | G3DSA:3.30.420.10 | - | 1301 | 1427 | 2.9E-27 | IPR036397 |
| Gene3D | G3DSA:2.40.70.10 | Acid Proteases | 688 | 796 | 1.1E-10 | IPR021109 |
| ProSiteProfiles | PS50879 | RNase H domain profile. | 1299 | 1428 | 11.845623 | IPR002156 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 959 | 1141 | 10.351545 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2059 | 2087 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 805 | 824 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2194 | 2268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1750 | 1797 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1992 | 2007 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1826 | 2117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 515 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2036 | 2058 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 501 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1886 | 1916 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2251 | 2268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 789 | 824 | - | - |
| Coils | Coil | Coil | 267 | 287 | - | - |
| Coils | Coil | Coil | 594 | 614 | - | - |
| Coils | Coil | Coil | 2140 | 2160 | - | - |
| Coils | Coil | Coil | 2166 | 2186 | - | - |
Gene Ontology
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26400.1 | eukaryotic translation initiation factor 4B1. member of eIF4B - eukaryotic initiation factor 4B | 4.12E-64 |
| RefSeq | XP_052161258.1 | uncharacterized protein LOC127778677 isoform X1 [Oryza glaberrima] | 4.92E-268 |
| Q9AUJ7 | Eukaryotic translation initiation factor 4B1 OS=Triticum aestivum OX=4565 GN=EIF4B PE=1 SV=1 | 2.02E-120 | |
| TrEMBL | L0P3P1 | PH01B001I13.4 protein OS=Phyllostachys edulis OX=38705 GN=PH01B001I13.4 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 30 | AH02.2831, AH03.661, AH04.1103, AH04.216, AH04.458, BH01.627 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_053643, gene-QYE76_056610 |