Basic Information
Locus ID:
BH07.2231
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 29721788 | 29739050 | - | BH07.2231 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.43 | 194,254.91 Da | 49.50 | 81.60 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13156 | KOW_RPL6 | 67 | 218 | 2.97458E-89 | IPR041997 |
| Pfam | PF14291 | Domain of unknown function (DUF4371) | 1060 | 1295 | 2.7E-54 | IPR025398 |
| Pfam | PF01159 | Ribosomal protein L6e | 112 | 218 | 1.1E-37 | IPR000915 |
| Pfam | PF05699 | hAT family C-terminal dimerisation region | 1629 | 1692 | 5.4E-7 | IPR008906 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 73 | 157 | 1.26E-23 | IPR008991 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 290 | 644 | 1.88E-21 | IPR036322 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1202 | 1690 | 1.44E-35 | IPR012337 |
| Gene3D | G3DSA:2.30.30.30 | - | 73 | 157 | 2.5E-14 | IPR014722 |
| Gene3D | G3DSA:2.130.10.10 | - | 293 | 646 | 1.4E-20 | IPR015943 |
| SMART | SM00320 | WD40_4 | 326 | 366 | 71.0 | IPR001680 |
| SMART | SM00597 | 2118neu4 | 1015 | 1110 | 1.3E-21 | IPR006580 |
| SMART | SM00320 | WD40_4 | 427 | 466 | 2.6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 382 | 422 | 0.1 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 389 | 431 | 8.570195 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 453 | 467 | - | IPR019775 |
| ProSitePatterns | PS01170 | Ribosomal protein L6e signature. | 113 | 131 | - | IPR000915 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 70 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 724 | 837 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 930 | 957 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 771 | 800 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 724 | 752 | - | - |
| Coils | Coil | Coil | 148 | 168 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19260.1 | TTF-type zinc finger protein with HAT dimerisation domain. | 4.05E-196 |
| RefSeq | XP_004969253.2 | zinc finger MYM-type protein 1-like [Setaria italica] | 0 |
| Q9C9C5 | Large ribosomal subunit protein eL6x OS=Arabidopsis thaliana OX=3702 GN=RPL6C PE=2 SV=1 | 9.15E-86 | |
| TrEMBL | A0A8T0SCR1 | TTF-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_5KG216507 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg16286 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11665 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah004947 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_4g072170 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg17934, Sbi_jg62565 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg1141 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00007097 |
| Amaranthaceae | Suaeda glauca | 4 | Sgl23910, Sgl29079, Sgl74432, Sgl77986 |
| Amaranthaceae | Chenopodium album | 2 | gene:ENSEOMG00000009251, gene:ENSEOMG00000043193 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0001020, CQ.Regalona.r1.4BG0001150 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30052270 |
| Apiaceae | Apium graveolens | 1 | Ag5G02714 |
| Arecaceae | Cocos nucifera | 1 | scaffold000339G000010 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103711385, gene-LOC120107781 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_01.3333.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G23724 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G12920.2 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10015483m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp6g31040.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB08g006000.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq05G2026 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl05G1999 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g06110 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0375s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate04g08230 |
| Nitrariaceae | Nitraria sibirica | 3 | evm.TU.LG09.294, evm.TU.LG09.295, evm.TU.LG10.1168 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00015047 |
| Plumbaginaceae | Limonium bicolor | 2 | Lb7G33194, Lb7G33196 |
| Poaceae | Echinochloa crus-galli | 3 | AH07.2415, BH07.2231, CH07.2299 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_2AG0135840, gene-QOZ80_2BG0191370 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0589950.2 |
| Poaceae | Oryza coarctata | 3 | Oco03G014010, Oco04G014400, Oco04G015620 |
| Poaceae | Oryza sativa | 1 | LOC_Os02g37856.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G179200 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0100744, Pt_Chr0204400 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr09G012960, Chr13G008830 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G400900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC6AG031290, gene_TRIDC6BG037740 |
| Poaceae | Triticum aestivum | 3 | TraesCS6A02G205100.1, TraesCS6B02G225500.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb245730_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-29788 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g13791 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG18.1791, evm.TU.LG20.107 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g10730 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_13_RagTag.1074 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-29948 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-3563 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-16439 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00015714 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-4548 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-20727 |
| Salicaceae | Populus euphratica | 1 | populus_peu04356 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132644062 |
| Solanaceae | Solanum chilense | 1 | SOLCI002849000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107003228 |
| Zosteraceae | Zostera marina | 1 | Zosma03g07580.v3.1 |