Basic Information
Locus ID:
BH07.2229
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 29708708 | 29714467 | - | BH07.2229 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.44 | 119,969.84 Da | 49.61 | 78.45 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01650 | RT_nLTR_like | 624 | 873 | 1.17087E-52 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 417 | 453 | 8.1E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 331 | 368 | 0.076 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 288 | 323 | 2.5E-4 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 201 | 264 | 5.4E-5 | IPR024977 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 634 | 871 | 4.5E-42 | IPR000477 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 556 | 938 | 1.53E-22 | IPR043502 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 156 | 463 | 6.77E-58 | IPR036322 |
| Gene3D | G3DSA:3.30.70.270 | - | 670 | 846 | 3.1E-8 | IPR043128 |
| Gene3D | G3DSA:2.130.10.10 | - | 150 | 457 | 4.2E-117 | IPR015943 |
| SMART | SM00320 | WD40_4 | 370 | 411 | 4.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 243 | 280 | 0.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 284 | 323 | 1.0E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 326 | 368 | 0.0035 | IPR001680 |
| SMART | SM00320 | WD40_4 | 200 | 240 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 414 | 453 | 1.9E-8 | IPR001680 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 611 | 873 | 23.655396 | IPR000477 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 208 | 249 | 9.539323 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 421 | 454 | 10.970139 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 291 | 323 | 12.01227 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 291 | 323 | 10.021053 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 421 | 454 | 13.215325 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 440 | 454 | - | IPR019775 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22910.1 | FIZZY-related 2. | 9.39E-190 |
| RefSeq | XP_050128453.1 | uncharacterized protein LOC126605128 isoform X1 [Malus sylvestris] | 4.28E-253 |
| Q9M7I2 | B-type cell cycle switch protein ccs52A OS=Medicago truncatula OX=3880 GN=CCS52A PE=1 SV=1 | 2.16E-190 | |
| TrEMBL | A0A8T0UDJ9 | Reverse transcriptase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG093260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg22385, Sbi_jg25863 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007598, GOSA_00020792 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl20234 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000007376, gene:ENSEOMG00000009922 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0021820, CQ.Regalona.r1.6AG0000030 ... |
| Asteraceae | Flaveria trinervia | 16 | Ftri11G29042, Ftri15G13285, Ftri15G27723, Ftri16G20483 ... |
| Poaceae | Echinochloa crus-galli | 51 | AH01.164, AH01.394, AH02.1450, AH02.1545, AH02.2093, AH05.25 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0332600 |
| Poaceae | Hordeum vulgare | 36 | HORVU.MOREX.r3.1HG0031420.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 14 | gene-QYE76_000087, gene-QYE76_028678, gene-QYE76_030060 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G011730 |
| Poaceae | Paspalum vaginatum | 12 | gene-BS78_01G159000, gene-BS78_01G509100, gene-BS78_K023600 ... |
| Poaceae | Sporobolus alterniflorus | 58 | Chr01G023790, Chr01G030010, Chr01G030020, Chr02G006560 ... |
| Poaceae | Thinopyrum elongatum | 6 | Tel2E01G536000, Tel5E01G418900, Tel5E01G419000 ... |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG060430 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4890 |
| Solanaceae | Lycium barbarum | 88 | gene-LOC132601412, gene-LOC132601432, gene-LOC132601565 ... |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016424 |
| Tamaricaceae | Reaumuria soongarica | 22 | MSTRG.2861_chr02_-, STRG.10221_chr06_+, STRG.10559_chr07_- ... |