Basic Information
Locus ID:
BH07.2224
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 29622247 | 29627803 | - | BH07.2224 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.67 | 47,391.10 Da | 67.84 | 73.16 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 254 | 297 | 9.39859E-20 | - |
| Pfam | PF13639 | Ring finger domain | 255 | 297 | 1.6E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 254 | 303 | 1.03E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 219 | 302 | 8.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 255 | 296 | 1.0E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 255 | 297 | 13.536741 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 85 | 114 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 58 | 77 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 214 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06490.1 | RING/U-box superfamily protein. | 4.18E-30 |
| RefSeq | XP_004981503.1 | putative RING-H2 finger protein ATL71 [Setaria italica] | 1.06E-68 |
| Q9FG21 | Putative RING-H2 finger protein ATL71 OS=Arabidopsis thaliana OX=3702 GN=ATL71 PE=3 SV=1 | 4.05E-29 | |
| TrEMBL | K4AFG6 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101761734 PE=4 SV=1 | 2.4E-67 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 11 | AH02.1701, AH03.1663, AH03.1891, AH05.2284, AH08.1290 ... |
| Poaceae | Zea mays | 2 | Zm00001eb109200_P001, Zm00001eb273310_P001 |