Basic Information
Locus ID:
BH07.2160
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
zinc ion binding
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 28948073 | 28953385 | + | BH07.2160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.55 | 36,567.61 Da | 46.80 | 78.10 | -0.40 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02338 | ZZ_PCMF_like | 196 | 248 | 2.30863E-11 | - |
| Pfam | PF00569 | Zinc finger, ZZ type | 193 | 228 | 3.5E-7 | IPR000433 |
| SUPERFAMILY | SSF57850 | RING/U-box | 185 | 246 | 4.47E-15 | - |
| Gene3D | G3DSA:3.30.60.90 | - | 187 | 248 | 1.3E-15 | IPR043145 |
| SMART | SM00291 | zz_5 | 192 | 238 | 4.8E-6 | IPR000433 |
| ProSiteProfiles | PS50135 | Zinc finger ZZ-type profile. | 192 | 225 | 11.510031 | IPR000433 |
| ProSitePatterns | PS01357 | Zinc finger ZZ-type signature. | 198 | 225 | - | IPR000433 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 46 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_006664193.1 | E3 ubiquitin-protein ligase PRT1-like isoform X2 [Oryza brachyantha] | 8.31E-24 |
| O95714 | E3 ubiquitin-protein ligase HERC2 OS=Homo sapiens OX=9606 GN=HERC2 PE=1 SV=2 | 2.32E-6 | |
| TrEMBL | J3NEY0 | ZZ-type domain-containing protein OS=Oryza brachyantha OX=4533 PE=4 SV=1 | 1.13E-21 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||