Basic Information
Locus ID:
BH07.2150
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger, ZZ type
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 28690286 | 28695389 | + | BH07.2150 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.54 | 46,463.13 Da | 45.72 | 85.72 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16449 | RING-HC | 111 | 150 | 1.73276E-6 | - |
| Pfam | PF15227 | zinc finger of C3HC4-type, RING | 111 | 150 | 1.5E-7 | - |
| Pfam | PF00569 | Zinc finger, ZZ type | 289 | 324 | 5.0E-7 | IPR000433 |
| SUPERFAMILY | SSF57850 | RING/U-box | 110 | 157 | 1.57E-11 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 189 | 212 | 8.44E-5 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 282 | 342 | 1.11E-15 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 81 | 173 | 2.7E-12 | IPR013083 |
| Gene3D | G3DSA:3.30.60.90 | - | 283 | 344 | 1.9E-15 | IPR043145 |
| SMART | SM00184 | ring_2 | 111 | 150 | 6.8E-5 | IPR001841 |
| SMART | SM00291 | zz_5 | 288 | 334 | 4.8E-6 | IPR000433 |
| ProSiteProfiles | PS50135 | Zinc finger ZZ-type profile. | 288 | 321 | 11.510031 | IPR000433 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 111 | 151 | 10.999225 | IPR001841 |
| ProSitePatterns | PS01357 | Zinc finger ZZ-type signature. | 294 | 321 | - | IPR000433 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 126 | 135 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G24800.1 | proteolysis 1. Contains two ring finger domains and one ZZ domain. Week similarity to yeast Rad18p. Putative component of the N-end rule pathway (ubiquitin-dependent proteolysis). | 4.01E-18 |
| RefSeq | XP_006664193.1 | E3 ubiquitin-protein ligase PRT1-like isoform X2 [Oryza brachyantha] | 1.28E-57 |
| Q8LBL5 | E3 ubiquitin-protein ligase PRT1 OS=Arabidopsis thaliana OX=3702 GN=PRT1 PE=2 SV=2 | 3.97E-17 | |
| TrEMBL | A0A0E0B572 | RING-type domain-containing protein OS=Oryza glumipatula OX=40148 PE=4 SV=1 | 4.6E-42 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||