Basic Information
Locus ID:
BH07.2067
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 27644202 | 27645491 | - | BH07.2067 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.59 | 46,235.89 Da | 51.04 | 99.42 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 17 | 59 | 4.73927E-24 | - |
| Pfam | PF04564 | U-box domain | 13 | 87 | 1.1E-20 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 201 | 396 | 3.49E-16 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 92 | 1.88E-28 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 91 | 6.8E-29 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 108 | 410 | 5.4E-17 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 16 | 82 | 2.9E-32 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 12 | 89 | 37.684448 | IPR003613 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 156 | 181 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 1.66E-114 |
| RefSeq | XP_025792292.1 | E3 ubiquitin-protein ligase PUB23-like [Panicum hallii] | 2.73E-259 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 1.6E-113 | |
| TrEMBL | A0A3L6RPQ6 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM11G07170 PE=4 SV=1 | 2.54E-259 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology