Basic Information
Locus ID:
BH07.1791
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
MYND finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 24206572 | 24208075 | + | BH07.1791 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.76 | 44,330.77 Da | 45.31 | 75.47 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01753 | MYND finger | 341 | 381 | 4.3E-8 | IPR002893 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 337 | 387 | 1.59E-9 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 331 | 386 | 3.1E-9 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 2 | 269 | 7.3E-8 | IPR011990 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 339 | 381 | 11.153278 | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 52 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G67340.1 | HCP-like superfamily protein with MYND-type zinc finger. | 7.31E-74 |
| RefSeq | XP_039787166.1 | F-box protein At1g67340-like [Panicum virgatum] | 3.43E-154 |
| Q9FYF9 | F-box protein At1g67340 OS=Arabidopsis thaliana OX=3702 GN=At1g67340 PE=1 SV=1 | 7.07E-73 | |
| TrEMBL | A0A8T0WZE8 | MYND-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1NG388900 PE=4 SV=1 | 7.76E-153 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology