Basic Information
Locus ID:
BH07.1715
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Vacuolar protein sorting-associated protein 62
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 23146971 | 23214305 | - | BH07.1715 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.12 | 473,858.34 Da | 46.58 | 89.28 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 2615 | 2719 | 4.74433E-7 | - |
| Pfam | PF12624 | N-terminal region of Chorein or VPS13 | 2 | 112 | 2.0E-30 | IPR026854 |
| Pfam | PF16910 | Repeating coiled region of VPS13 | 572 | 795 | 5.9E-30 | IPR031642 |
| Pfam | PF00168 | C2 domain | 2658 | 2721 | 2.3E-5 | IPR000008 |
| Pfam | PF16908 | Vacuolar sorting-associated protein 13, N-terminal | 137 | 377 | 5.6E-64 | IPR031646 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 1975 | 2140 | 1.4E-12 | IPR009291 |
| Pfam | PF06650 | SHR-binding domain of vacuolar-sorting associated protein 13 | 3247 | 3560 | 1.2E-13 | IPR009543 |
| Pfam | PF06101 | Vacuolar protein sorting-associated protein 62 | 2278 | 2362 | 3.4E-8 | IPR009291 |
| Pfam | PF16909 | Vacuolar-sorting-associated 13 protein C-terminal | 3809 | 3911 | 2.3E-8 | IPR031645 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 2613 | 2721 | 3.45E-6 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 2601 | 2737 | 5.7E-7 | IPR035892 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 2596 | 2733 | 10.15893 | IPR000008 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 3053 | 3079 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48090.4 | - | 0 |
| RefSeq | XP_034588860.1 | uncharacterized protein LOC117851161 isoform X1 [Setaria viridis] | 0 |
| Q709C8 | Intermembrane lipid transfer protein VPS13C OS=Homo sapiens OX=9606 GN=VPS13C PE=1 SV=1 | 3.97E-38 | |
| TrEMBL | A0A4U6WBU4 | C2 domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_1G159900v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology