Basic Information
Locus ID:
BH07.1714
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
ARID/BRIGHT DNA binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 23113895 | 23117364 | + | BH07.1714 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.50 | 51,797.23 Da | 50.40 | 66.58 | -0.74 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16872 | ARID_HMGB9-like | 86 | 163 | 1.39438E-38 | - |
| CDD | cd01390 | HMGB-UBF_HMG-box | 289 | 349 | 8.41417E-18 | - |
| Pfam | PF01388 | ARID/BRIGHT DNA binding domain | 80 | 163 | 9.1E-19 | IPR001606 |
| Pfam | PF00505 | HMG (high mobility group) box | 289 | 356 | 4.0E-14 | IPR009071 |
| SUPERFAMILY | SSF46774 | ARID-like | 73 | 175 | 4.58E-28 | IPR036431 |
| SUPERFAMILY | SSF47095 | HMG-box | 280 | 360 | 8.25E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.30.10 | High mobility group box domain | 272 | 364 | 6.2E-20 | IPR036910 |
| Gene3D | G3DSA:1.10.150.60 | - | 65 | 185 | 6.7E-28 | IPR036431 |
| SMART | SM00501 | bright_3 | 77 | 168 | 5.3E-27 | IPR001606 |
| SMART | SM01014 | ARID_2 | 73 | 163 | 3.7E-25 | - |
| SMART | SM00398 | hmgende2 | 288 | 357 | 2.2E-18 | IPR009071 |
| ProSiteProfiles | PS51011 | ARID domain profile. | 76 | 167 | 25.661951 | IPR001606 |
| ProSiteProfiles | PS50118 | HMG boxes A and B DNA-binding domains profile. | 289 | 356 | 14.202378 | IPR009071 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 442 | 468 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 214 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 270 | 284 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 256 | 293 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 468 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04880.1 | HMG (high mobility group) box protein with ARID/BRIGHT DNA-binding domain. | 1.19E-83 |
| RefSeq | XP_039841399.1 | high mobility group B protein 15-like [Panicum virgatum] | 5.69E-270 |
| Q9MAT6 | High mobility group B protein 15 OS=Arabidopsis thaliana OX=3702 GN=HMGB15 PE=2 SV=1 | 1.15E-82 | |
| TrEMBL | A0A2T7F5S0 | ARID domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_1G166500 PE=4 SV=1 | 4.14E-269 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology