Basic Information
Locus ID:
BH07.1488
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Bulb-type mannose-specific lectin
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 17136778 | 17142864 | + | BH07.1488 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.23 | 90,035.73 Da | 34.38 | 80.00 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01098 | PAN_AP_plant | 315 | 396 | 5.54225E-21 | - |
| CDD | cd00028 | B_lectin | 20 | 135 | 2.16659E-28 | IPR001480 |
| Pfam | PF00069 | Protein kinase domain | 482 | 692 | 4.2E-40 | IPR000719 |
| Pfam | PF00954 | S-locus glycoprotein domain | 193 | 298 | 1.6E-18 | IPR000858 |
| Pfam | PF01453 | D-mannose binding lectin | 59 | 161 | 1.6E-26 | IPR001480 |
| Pfam | PF08276 | PAN-like domain | 319 | 381 | 1.8E-14 | IPR003609 |
| SUPERFAMILY | SSF51110 | alpha-D-mannose-specific plant lectins | 57 | 199 | 2.49E-20 | IPR036426 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 457 | 689 | 3.24E-62 | IPR011009 |
| Gene3D | G3DSA:2.90.10.10 | - | 10 | 131 | 1.9E-18 | IPR036426 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 443 | 550 | 5.4E-23 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 551 | 753 | 7.5E-44 | - |
| SMART | SM00108 | blect_4 | 19 | 135 | 3.0E-26 | IPR001480 |
| SMART | SM00473 | ntp_6 | 320 | 395 | 9.6E-8 | IPR003609 |
| PIRSF | PIRSF000641 | SRK | 4 | 705 | 2.2E-180 | IPR024171 |
| ProSiteProfiles | PS50948 | PAN/Apple domain profile. | 319 | 396 | 9.75186 | IPR003609 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 477 | 758 | 34.082035 | IPR000719 |
| ProSiteProfiles | PS50927 | Bulb-type lectin domain profile. | 13 | 130 | 16.993023 | IPR001480 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 722 | 755 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 788 | 814 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 775 | 814 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 715 | 755 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G21380.1 | receptor kinase 3. encodes a putative receptor-like serine/threonine protein kinases that is similar to Brassica self-incompatibility (S) locus. Expressed in root. Shoot expression limited to limited to the root-hypocotyl transition zone and at the base of lateral roots as well as in axillary buds, and pedicels. | 1.24E-144 |
| RefSeq | XP_039789421.1 | receptor-like serine/threonine-protein kinase SD1-8 isoform X1 [Panicum virgatum] | 0 |
| O81905 | Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 | 1.2E-143 | |
| TrEMBL | A0A811Q6Q9 | ribonuclease P OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS34902 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||