Basic Information
Locus ID:
BH07.1242
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Anaphase-promoting complex subunit 4 WD40 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 13094671 | 13104926 | - | BH07.1242 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.24 | 51,235.77 Da | 49.65 | 73.73 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 159 | 442 | 2.3476E-44 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 407 | 442 | 7.0E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 319 | 357 | 0.0074 | IPR001680 |
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 187 | 244 | 7.5E-6 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 268 | 303 | 6.1E-7 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 160 | 442 | 4.39E-59 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 95 | 445 | 2.0E-124 | IPR015943 |
| SMART | SM00320 | WD40_4 | 264 | 303 | 5.9E-9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 180 | 219 | 1.2E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 222 | 260 | 1.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 315 | 357 | 3.0E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 360 | 400 | 290.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 403 | 442 | 8.3E-6 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 410 | 443 | 10.574686 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 410 | 443 | 12.714052 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 187 | 224 | 8.940149 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 271 | 305 | 11.708317 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 187 | 228 | 12.17936 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 271 | 312 | 14.719144 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 290 | 304 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 429 | 443 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 45 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33270.1 | Transducin family protein / WD-40 repeat family protein. putative cdc20 protein (CDC20.1) | 1.13E-230 |
| RefSeq | XP_025808881.1 | cell division cycle 20.2, cofactor of APC complex-like [Panicum hallii] | 0 |
| Q9SZA4 | Cell division cycle 20.1, cofactor of APC complex OS=Arabidopsis thaliana OX=3702 GN=CDC20-1 PE=1 SV=1 | 1.09E-229 | |
| TrEMBL | A0A835F734 | ANAPC4_WD40 domain-containing protein OS=Digitaria exilis OX=1010633 GN=HU200_017721 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology