halophFGD

Basic Information

Locus ID: BH07.1203

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description: Leucine rich repeat

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH07	12534287	12540264	+	BH07.1203

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
6.09	145,903.95 Da	38.58	103.59	-0.03

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF08263	Leucine rich repeat N-terminal domain	347	383	1.5E-10	IPR013210
Pfam	PF13855	Leucine rich repeat	938	996	1.9E-8	IPR001611
Pfam	PF13456	Reverse transcriptase-like	3	67	9.0E-10	IPR002156
Pfam	PF00069	Protein kinase domain	1100	1310	3.5E-25	IPR000719
SUPERFAMILY	SSF56112	Protein kinase-like (PK-like)	1101	1311	4.78E-45	IPR011009
SUPERFAMILY	SSF52058	L domain-like	347	618	1.63E-59	-
SUPERFAMILY	SSF52058	L domain-like	556	778	5.53E-41	-
SUPERFAMILY	SSF52058	L domain-like	772	1021	2.21E-53	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	534	784	4.1E-58	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	785	1032	1.7E-69	IPR032675
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	346	457	9.1E-32	IPR032675
Gene3D	G3DSA:3.30.420.10	-	1	75	2.4E-10	IPR036397
Gene3D	G3DSA:1.10.510.10	Transferase(Phosphotransferase) domain 1	1103	1323	5.4E-55	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	458	533	2.8E-20	IPR032675
SMART	SM00369	LRR_typ_2	508	532	22.0	IPR003591
SMART	SM00369	LRR_typ_2	412	436	120.0	IPR003591
SMART	SM00369	LRR_typ_2	838	862	220.0	IPR003591
SMART	SM00369	LRR_typ_2	983	1008	23.0	IPR003591
SMART	SM00220	serkin_6	1035	1321	8.1E-10	IPR000719
SMART	SM00369	LRR_typ_2	628	652	98.0	IPR003591
SMART	SM00369	LRR_typ_2	790	814	120.0	IPR003591
SMART	SM00369	LRR_typ_2	676	700	180.0	IPR003591
SMART	SM00369	LRR_typ_2	911	935	160.0	IPR003591
ProSiteProfiles	PS50011	Protein kinase domain profile.	1014	1289	23.043379	IPR000719
ProSiteProfiles	PS51450	Leucine-rich repeat profile.	510	532	7.634948	IPR001611
ProSitePatterns	PS00108	Serine/Threonine protein kinases active-site signature.	1152	1164	-	IPR008271

Gene Ontology

Biological Process:

GO:0006468 (protein phosphorylation)

Molecular Function:

GO:0003676 (nucleic acid binding) GO:0004523 (RNA-DNA hybrid ribonuclease activity) GO:0004672 (protein kinase activity) GO:0005515 (protein binding) GO:0005524 (ATP binding)

KEGG Pathway

KO Term:

K04730 (interleukin-1 receptor-associated kinase 1 [EC:2.7.11.1])

Pathway:

ko04010 (MAPK signaling pathway) map04010 (MAPK signaling pathway) map04064 (NF-kappa B signaling pathway) map04620 (Toll-like receptor signaling pathway) ko04624 (Toll and Imd signaling pathway) map04624 (Toll and Imd signaling pathway)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G47090.1	Leucine-rich repeat protein kinase family protein.	8.29E-49
RefSeq	XP_039787534.1	probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Panicum virgatum]	1.29E-162
Swiss-Prot	C0LGP4	Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana OX=3702 GN=At3g47570 PE=2 SV=1	2.52E-47
TrEMBL	A0A1E5UXV8	Putative LRR receptor-like serine/threonine-protein kinase (Fragment) OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0021229 PE=4 SV=1	7.07E-167

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	2	AH04.1385, BH07.1203