Basic Information
Locus ID:
BH07.1190
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 12391029 | 12391721 | + | BH07.1190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.36 | 23,236.91 Da | 58.34 | 75.00 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 152 | 195 | 8.66065E-19 | - |
| Pfam | PF13639 | Ring finger domain | 152 | 195 | 1.9E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 150 | 200 | 7.88E-22 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 105 | 200 | 6.9E-23 | IPR013083 |
| SMART | SM00184 | ring_2 | 153 | 194 | 5.3E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 153 | 195 | 12.459772 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G40070.1 | RING/U-box superfamily protein. | 1.31E-17 |
| RefSeq | XP_034584029.1 | E3 ubiquitin-protein ligase Os03g0188200-like [Setaria viridis] | 1.49E-85 |
| Q8W571 | RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3 | 1.29E-16 | |
| TrEMBL | A0A4U6W383 | RING-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_1G013500v2 PE=4 SV=1 | 3.37E-84 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology