Basic Information
Locus ID:
BH07.1189
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 12388025 | 12388762 | + | BH07.1189 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.21 | 25,993.65 Da | 43.81 | 83.22 | 0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 170 | 213 | 4.83177E-16 | - |
| Pfam | PF13639 | Ring finger domain | 171 | 213 | 3.3E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 169 | 219 | 1.86E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 152 | 220 | 9.4E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 171 | 212 | 2.8E-6 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 171 | 213 | 12.090947 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G15975.1 | RING/U-box superfamily protein. | 1.36E-14 |
| RefSeq | XP_012699782.1 | RING-H2 finger protein ATL39 [Setaria italica] | 1.11E-98 |
| Q8LF65 | RING-H2 finger protein ATL17 OS=Arabidopsis thaliana OX=3702 GN=ATL17 PE=2 SV=2 | 4.8E-13 | |
| TrEMBL | K3YY03 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101785972 PE=4 SV=1 | 2.51E-97 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology