Basic Information
Locus ID:
BH07.1149
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 12007519 | 12008172 | - | BH07.1149 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.90 | 21,761.76 Da | 58.14 | 83.41 | 0.33 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 150 | 192 | 1.04461E-18 | - |
| Pfam | PF13639 | Ring finger domain | 150 | 192 | 9.8E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 149 | 197 | 1.59E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 108 | 198 | 1.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 150 | 191 | 2.9E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 150 | 192 | 12.282736 | IPR001841 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G40070.1 | RING/U-box superfamily protein. | 1.71E-16 |
| RefSeq | XP_025796764.1 | RING-H2 finger protein ATL39-like [Panicum hallii] | 2.71E-83 |
| Q8W571 | RING-H2 finger protein ATL32 OS=Arabidopsis thaliana OX=3702 GN=ATL32 PE=2 SV=3 | 1.69E-15 | |
| TrEMBL | A0A1E5VXF6 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0009170 PE=4 SV=1 | 1.58E-93 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology