Basic Information
Locus ID:
BH07.1136
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 11846934 | 11847545 | + | BH07.1136 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.35 | 22,077.90 Da | 79.29 | 70.79 | -0.21 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 150 | 193 | 3.5E-11 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 140 | 196 | 1.85E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 110 | 198 | 3.9E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 151 | 192 | 0.0053 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 151 | 193 | 10.276328 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 100 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G09100.1 | RING/U-box superfamily protein. | 1.36E-11 |
| RefSeq | XP_025819143.1 | RING-H2 finger protein ATL3-like [Panicum hallii] | 3.5E-85 |
| Q9M0R7 | RING-H2 finger protein ATL39 OS=Arabidopsis thaliana OX=3702 GN=ATL39 PE=2 SV=1 | 1.32E-10 | |
| TrEMBL | A0A1E5UY26 | RING-type domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0021188 PE=4 SV=1 | 1.63E-91 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH07.1022, BH07.1136, BH07.1141, CH07.914, CH07.920 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_2AG0107690, gene-QOZ80_2AG0107720 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.6HG0575080.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_022027, gene-QYE76_048206 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_04G103600 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G013640, Chr0G033280, Chr15G023360 |
| Poaceae | Thinopyrum elongatum | 1 | Tel6E01G344800 |
| Poaceae | Triticum aestivum | 1 | TraesCS6A02G172100.1.cds1 |
| Poaceae | Zea mays | 1 | Zm00001eb238470_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-34205, nbis-gene-53142 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g12513 |