Basic Information
Locus ID:
BH07.1009
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Domain of unknown function (DUF4283)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH07 | 9824896 | 9828023 | + | BH07.1009 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.28 | 75,172.96 Da | 47.48 | 88.41 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00271 | Helicase conserved C-terminal domain | 529 | 628 | 5.9E-9 | IPR001650 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 352 | 487 | 4.6E-22 | IPR011545 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 373 | 629 | 1.8E-34 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 510 | 671 | 1.4E-23 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 312 | 508 | 5.7E-38 | IPR027417 |
| SMART | SM00487 | ultradead3 | 325 | 519 | 4.5E-20 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 515 | 671 | 10.867446 | IPR001650 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 335 | 505 | 19.940184 | IPR014001 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 451 | 459 | - | IPR000629 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 257 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 192 | 223 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 150 | 178 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.3 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 2.82E-101 |
| RefSeq | XP_039786278.1 | ATP-dependent RNA helicase drs1-like [Panicum virgatum] | 1.04E-239 |
| Q0E2Q3 | Putative eukaryotic initiation factor 4A-2 OS=Oryza sativa subsp. japonica OX=39947 GN=Os02g0221300 PE=3 SV=2 | 6.47E-126 | |
| TrEMBL | A0A8T0XNX4 | DUF4283 domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_1KG191600 PE=4 SV=1 | 2.34E-238 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology