Basic Information
Locus ID:
BH06.962
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Anaphase-promoting complex subunit 11 RING-H2 finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 9231765 | 9233036 | - | BH06.962 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.24 | 44,179.56 Da | 51.66 | 73.83 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 181 | 224 | 1.21415E-18 | - |
| Pfam | PF13639 | Ring finger domain | 181 | 224 | 4.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 230 | 2.99E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 138 | 228 | 5.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 182 | 223 | 1.5E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 182 | 224 | 12.563043 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 40 | 66 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 423 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G40250.1 | RING/U-box superfamily protein. | 1.2E-86 |
| RefSeq | XP_004965067.1 | RING-H2 finger protein ATL46 [Setaria italica] | 3.66E-207 |
| Q9FL07 | RING-H2 finger protein ATL46 OS=Arabidopsis thaliana OX=3702 GN=ATL46 PE=2 SV=1 | 1.16E-85 | |
| TrEMBL | K3XX71 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=101771342 PE=4 SV=1 | 8.28E-206 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology