Basic Information
Locus ID:
BH06.798
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 7378597 | 7379601 | - | BH06.798 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.83 | 36,041.93 Da | 82.58 | 61.11 | -0.46 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 198 | 240 | 1.78004E-23 | - |
| Pfam | PF13639 | Ring finger domain | 198 | 240 | 7.3E-12 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 19 | 52 | 1.2E-11 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 179 | 250 | 3.3E-23 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 162 | 246 | 4.1E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 199 | 239 | 7.2E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 199 | 240 | 12.356501 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 139 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 245 | 272 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 9.79E-43 |
| RefSeq | XP_025810728.1 | E3 ubiquitin-protein ligase RING1-like [Panicum hallii] | 1.84E-166 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 9.29E-36 | |
| TrEMBL | A0A1E5WAH1 | RING-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0004655 PE=4 SV=1 | 2.34E-167 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology