Basic Information
Locus ID:
BH06.661
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin elongating factor core
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 5807242 | 5809210 | + | BH06.661 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.74 | 13,342.13 Da | 13.98 | 88.76 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF04564 | U-box domain | 23 | 60 | 1.1E-10 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 15 | 63 | 7.59E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 73 | 3.0E-10 | IPR013083 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 99 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15400.1 | U-box domain-containing protein. | 3.13E-22 |
| RefSeq | XP_025795563.1 | probable ubiquitin conjugation factor E4 isoform X2 [Panicum hallii] | 2.15E-25 |
| Q9LF41 | Probable ubiquitin conjugation factor E4 OS=Arabidopsis thaliana OX=3702 GN=PUB1 PE=2 SV=1 | 3.11E-21 | |
| TrEMBL | A0A8T0MS67 | U-box domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG516100 PE=3 SV=1 | 4.52E-24 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 1 | COCNU_13G006030 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0360 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0318 |
| Poaceae | Echinochloa crus-galli | 6 | BH01.2372, BH04.1573, BH05.2523, BH06.661, BH07.3213 ... |