Basic Information
Locus ID:
BH06.596
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 5181703 | 5188522 | + | BH06.596 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.85 | 93,145.96 Da | 68.36 | 63.10 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08368 | LIM | 521 | 596 | 2.71136E-4 | - |
| CDD | cd09396 | LIM_DA1 | 494 | 546 | 2.33849E-30 | - |
| Pfam | PF12315 | Protein DA1 | 643 | 851 | 5.6E-102 | IPR022087 |
| Pfam | PF00412 | LIM domain | 494 | 549 | 6.9E-9 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 520 | 575 | 9.73E-9 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 486 | 519 | 1.43E-6 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 489 | 568 | 2.8E-15 | - |
| SMART | SM00132 | lim_4 | 493 | 545 | 4.0E-11 | IPR001781 |
| SMART | SM00726 | uim | 388 | 407 | 0.13 | IPR003903 |
| SMART | SM00726 | uim | 419 | 438 | 0.33 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 492 | 552 | 12.2068 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 419 | 438 | 9.681105 | IPR003903 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 388 | 407 | 9.071364 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 494 | 528 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 60 | 101 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 782 | 802 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 253 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19270.1 | DA1. | 4.33E-213 |
| RefSeq | XP_039805873.1 | protein DA1-related 1-like [Panicum virgatum] | 0 |
| P0C7Q8 | Protein DA1 OS=Arabidopsis thaliana OX=3702 GN=DA1 PE=1 SV=1 | 4.16E-212 | |
| TrEMBL | A0A811S794 | LIM zinc-binding domain-containing protein OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS61538 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology