Basic Information
Locus ID:
BH06.568
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Protein phosphatase 2C
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 4909433 | 4914598 | + | BH06.568 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 96,547.46 Da | 40.55 | 85.94 | -0.29 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00143 | PP2Cc | 434 | 732 | 1.26711E-56 | IPR001932 |
| Pfam | PF00069 | Protein kinase domain | 28 | 305 | 3.3E-49 | IPR000719 |
| Pfam | PF00481 | Protein phosphatase 2C | 431 | 698 | 4.2E-40 | IPR001932 |
| SUPERFAMILY | SSF81606 | PP2C-like | 440 | 734 | 6.93E-53 | IPR036457 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 9 | 307 | 8.73E-72 | IPR011009 |
| Gene3D | G3DSA:3.60.40.10 | - | 427 | 744 | 5.3E-83 | IPR036457 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 2 | 100 | 1.2E-25 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 121 | 333 | 1.2E-53 | - |
| SMART | SM00220 | serkin_6 | 27 | 310 | 8.1E-32 | IPR000719 |
| SMART | SM00332 | PP2C_4 | 425 | 730 | 4.5E-70 | IPR001932 |
| ProSiteProfiles | PS51746 | PPM-type phosphatase domain profile. | 433 | 732 | 41.867397 | IPR001932 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 27 | 323 | 36.371742 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 164 | 176 | - | IPR008271 |
| ProSitePatterns | PS01032 | PPM-type phosphatase domain signature. | 460 | 468 | - | IPR000222 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 33 | 56 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 359 | 382 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 334 | 385 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G17090.1 | Protein phosphatase 2C family protein. | 2.75E-129 |
| RefSeq | XP_034590661.1 | uncharacterized protein LOC117852606 [Setaria viridis] | 0 |
| Q7Y138 | Probable protein phosphatase 2C 36 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0832400 PE=2 SV=1 | 1.28E-146 | |
| TrEMBL | A0A4V6D7X9 | protein-serine/threonine phosphatase OS=Setaria viridis OX=4556 GN=SEVIR_4G051000v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.516, BH06.568, CH06.582 |
| Poaceae | Triticum aestivum | 1 | TraesCS3B02G094100.1 |