Basic Information
Locus ID:
BH06.474
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Modified RING finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 4254483 | 4258783 | - | BH06.474 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.71 | 88,359.21 Da | 44.60 | 79.82 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16655 | RING-Ubox_WDSUB1_like | 709 | 750 | 6.98597E-26 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 423 | 674 | 3.9E-43 | IPR001245 |
| Pfam | PF04564 | U-box domain | 706 | 776 | 3.6E-19 | IPR003613 |
| Pfam | PF13181 | Tetratricopeptide repeat | 180 | 211 | 0.014 | IPR019734 |
| SUPERFAMILY | SSF48452 | TPR-like | 145 | 257 | 1.88E-36 | IPR011990 |
| SUPERFAMILY | SSF57850 | RING/U-box | 703 | 777 | 2.47E-26 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 394 | 673 | 1.01E-68 | IPR011009 |
| SUPERFAMILY | SSF48452 | TPR-like | 8 | 133 | 4.17E-31 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 7 | 139 | 9.9E-31 | IPR011990 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 397 | 490 | 7.3E-28 | - |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 143 | 258 | 8.5E-33 | IPR011990 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 491 | 703 | 7.0E-48 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 704 | 779 | 7.5E-30 | IPR013083 |
| SMART | SM00028 | tpr_5 | 179 | 212 | 6.7E-4 | IPR019734 |
| SMART | SM00028 | tpr_5 | 213 | 246 | 0.042 | IPR019734 |
| SMART | SM00028 | tpr_5 | 145 | 178 | 0.1 | IPR019734 |
| SMART | SM00028 | tpr_5 | 85 | 118 | 150.0 | IPR019734 |
| SMART | SM00028 | tpr_5 | 44 | 77 | 0.94 | IPR019734 |
| SMART | SM00220 | serkin_6 | 418 | 689 | 2.1E-33 | IPR000719 |
| SMART | SM00504 | Ubox_2 | 708 | 771 | 8.9E-30 | IPR003613 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 179 | 212 | 8.2014 | IPR019734 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 704 | 778 | 39.860489 | IPR003613 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 418 | 684 | 34.619125 | IPR000719 |
| ProSiteProfiles | PS50005 | TPR repeat profile. | 145 | 178 | 9.6469 | IPR019734 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 536 | 548 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 424 | 445 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 149 | - | - |
| Coils | Coil | Coil | 286 | 306 | - | - |
| Coils | Coil | Coil | 117 | 150 | - | - |
| Coils | Coil | Coil | 317 | 362 | - | - |
| Coils | Coil | Coil | 370 | 390 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G45910.1 | U-box domain-containing protein kinase family protein. | 1.84E-129 |
| RefSeq | XP_025811532.1 | U-box domain-containing protein 70-like isoform X2 [Panicum hallii] | 0 |
| Q5WA76 | U-box domain-containing protein 70 OS=Oryza sativa subsp. japonica OX=39947 GN=PUB70 PE=1 SV=1 | 0 | |
| TrEMBL | A0A2S3HLN3 | RING-type E3 ubiquitin transferase OS=Panicum hallii OX=206008 GN=PAHAL_4G315400 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.358, BH06.474, CH06.471 |
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0510180, gene-QOZ80_6AG0512070 ... |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0654940.1, HORVU.MOREX.r3.7HG0655040.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_028463, gene-QYE76_028467 |
| Poaceae | Oryza coarctata | 2 | Oco11G002860, Oco12G002920 |
| Poaceae | Oryza sativa | 4 | LOC_Os06g06450.1, LOC_Os06g06470.1, LOC_Os06g06490.1 ... |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G053600 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0100581, Pt_Chr0401511, Pt_Chr0401540, Pt_Chr0402087 ... |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G022250 |
| Poaceae | Thinopyrum elongatum | 5 | Tel6E01G117100, Tel6E01G538000, Tel7E01G244100 ... |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC7AG014340, gene_TRIDC7AG014380 ... |
| Poaceae | Triticum aestivum | 6 | TraesCS7A02G122200.2, TraesCS7A02G122600.1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb257390_P002, Zm00001eb375820_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34785 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31406 |