Basic Information
Locus ID:
BH06.405
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 3543584 | 3544156 | - | BH06.405 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.18 | 19,432.34 Da | 45.54 | 91.21 | 0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 134 | 177 | 1.30126E-16 | - |
| Pfam | PF13639 | Ring finger domain | 134 | 177 | 6.5E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 129 | 181 | 1.52E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 101 | 182 | 6.4E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 135 | 176 | 3.1E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 135 | 177 | 12.518784 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 21 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G05200.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL6 (ATL6). | 3.19E-13 |
| RefSeq | XP_025813272.1 | RING-H2 finger protein ATL66-like [Panicum hallii] | 1.25E-84 |
| Q8RXX9 | E3 ubiquitin-protein ligase ATL6 OS=Arabidopsis thaliana OX=3702 GN=ATL6 PE=1 SV=2 | 3.17E-12 | |
| TrEMBL | A0A2S3HLQ4 | RING-type E3 ubiquitin transferase OS=Panicum hallii OX=206008 GN=PAHAL_4G321500 PE=4 SV=1 | 2.82E-83 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH06.296, BH06.405, CH06.402 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_6AG0509460, gene-QOZ80_6BG0461560 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_013958 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g06150.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G047100 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr11G022660 |
| Poaceae | Zea mays | 1 | Zm00001eb376620_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-34749 |