Basic Information
Locus ID:
BH06.316
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 2855375 | 2856244 | + | BH06.316 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.05 | 31,062.33 Da | 80.50 | 50.45 | -0.68 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 219 | 260 | 4.3E-9 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 210 | 265 | 5.71E-16 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 196 | 269 | 4.2E-14 | IPR013083 |
| SMART | SM00184 | ring_2 | 220 | 259 | 1.5E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 220 | 260 | 12.267982 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 55 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 134 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039806486.1 | E3 ubiquitin-protein ligase Os06g0535400-like [Panicum virgatum] | 2.76E-18 |
| TrEMBL | K3Y383 | RING-type domain-containing protein OS=Setaria italica OX=4555 PE=4 SV=1 | 8.63E-46 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH06.213, BH06.316 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G036000 |