Basic Information
Locus ID:
BH06.2884
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 34976861 | 34978729 | - | BH06.2884 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.26 | 43,430.79 Da | 56.34 | 95.46 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 160 | 207 | 1.27136E-11 | - |
| Pfam | PF12906 | RING-variant domain | 160 | 206 | 1.5E-9 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 157 | 210 | 7.06E-11 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 144 | 214 | 3.8E-13 | IPR013083 |
| SMART | SM00744 | ringv_2 | 159 | 207 | 7.0E-15 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 152 | 213 | 17.35042 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 377 | 399 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 9.46E-71 |
| RefSeq | XP_004951168.1 | uncharacterized protein LOC101753831 isoform X1 [Setaria italica] | 2.41E-169 |
| TrEMBL | A0A2S3GKC2 | RING-CH-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_1G000100 PE=4 SV=1 | 1.16E-170 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology