Basic Information
Locus ID:
BH06.2879
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 34952242 | 34958516 | + | BH06.2879 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 94,826.36 Da | 55.65 | 75.05 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF16135 | Tify domain binding domain | 263 | 318 | 1.3E-17 | IPR032308 |
| Pfam | PF16135 | Tify domain binding domain | 443 | 491 | 5.8E-18 | IPR032308 |
| Pfam | PF00628 | PHD-finger | 510 | 551 | 7.5E-8 | IPR019787 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 744 | 843 | 3.83E-8 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 493 | 552 | 3.29E-15 | IPR011011 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 598 | 652 | 1.17E-8 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 691 | 859 | 9.4E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 497 | 578 | 3.8E-17 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 597 | 656 | 3.5E-11 | IPR013083 |
| SMART | SM00249 | PHD_3 | 597 | 654 | 6.9E-4 | IPR001965 |
| SMART | SM00249 | PHD_3 | 509 | 550 | 2.0E-10 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 507 | 552 | 10.469 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 510 | 549 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 394 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 200 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 101 | 118 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 60 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 165 | 199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 146 | 164 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 375 | 392 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G27980.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger domain. | 6.06E-201 |
| RefSeq | XP_025813710.1 | uncharacterized protein LOC112891032 [Panicum hallii] | 0 |
| Q6PDQ2 | Chromodomain-helicase-DNA-binding protein 4 OS=Mus musculus OX=10090 GN=Chd4 PE=1 SV=1 | 3.53E-13 | |
| TrEMBL | A0A2T7DTK7 | PHD-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G000500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology