Basic Information
Locus ID:
BH06.2850
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Reverse transcriptase (RNA-dependent DNA polymerase)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 34599421 | 34605366 | + | BH06.2850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.61 | 154,999.27 Da | 50.39 | 75.39 | -0.61 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00118 | LysM | 1068 | 1110 | 2.17829E-7 | IPR018392 |
| CDD | cd01650 | RT_nLTR_like | 609 | 841 | 5.58005E-42 | - |
| CDD | cd09076 | L1-EN | 96 | 334 | 8.84152E-40 | - |
| Pfam | PF01476 | LysM domain | 1068 | 1111 | 3.3E-4 | IPR018392 |
| Pfam | PF00078 | Reverse transcriptase (RNA-dependent DNA polymerase) | 619 | 839 | 6.2E-37 | IPR000477 |
| SUPERFAMILY | SSF56219 | DNase I-like | 87 | 322 | 1.7E-23 | IPR036691 |
| SUPERFAMILY | SSF54106 | LysM domain | 1067 | 1111 | 9.81E-5 | IPR036779 |
| SUPERFAMILY | SSF56672 | DNA/RNA polymerases | 542 | 905 | 1.97E-18 | IPR043502 |
| Gene3D | G3DSA:3.60.10.10 | Endonuclease/exonuclease/phosphatase | 93 | 335 | 1.2E-33 | IPR036691 |
| Gene3D | G3DSA:3.30.70.270 | - | 638 | 814 | 9.7E-8 | IPR043128 |
| Gene3D | G3DSA:3.10.350.10 | LysM domain | 1059 | 1117 | 2.8E-12 | IPR036779 |
| SMART | SM00257 | LysM_2 | 1067 | 1111 | 2.5E-5 | IPR018392 |
| ProSiteProfiles | PS51782 | LysM domain profile. | 1066 | 1110 | 11.753138 | IPR018392 |
| ProSiteProfiles | PS50878 | Reverse transcriptase (RT) catalytic domain profile. | 596 | 841 | 23.450407 | IPR000477 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1239 | 1255 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1121 | 1162 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1224 | 1258 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1224 | 1238 | - | - |
| Coils | Coil | Coil | 435 | 455 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G08200.1 | peptidoglycan-binding LysM domain-containing protein. | 1.66E-27 |
| RefSeq | XP_050128453.1 | uncharacterized protein LOC126605128 isoform X1 [Malus sylvestris] | 0 |
| Q03278 | Retrovirus-related Pol polyprotein from type-1 retrotransposable element R2 (Fragment) OS=Nasonia vitripennis OX=7425 PE=4 SV=2 | 3.18E-15 | |
| TrEMBL | A0A8T0UDJ9 | Reverse transcriptase domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG093260 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg22385, Sbi_jg25863 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00007598, GOSA_00020792 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl20234 |
| Amaranthaceae | Chenopodium album | 6 | gene:ENSEOMG00000007376, gene:ENSEOMG00000009922 ... |
| Amaranthaceae | Chenopodium quinoa | 3 | CQ.Regalona.r1.4AG0021820, CQ.Regalona.r1.6AG0000030 ... |
| Asteraceae | Flaveria trinervia | 16 | Ftri11G29042, Ftri15G13285, Ftri15G27723, Ftri16G20483 ... |
| Poaceae | Echinochloa crus-galli | 51 | AH01.164, AH01.394, AH02.1450, AH02.1545, AH02.2093, AH05.25 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_4BG0332600 |
| Poaceae | Hordeum vulgare | 36 | HORVU.MOREX.r3.1HG0031420.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 14 | gene-QYE76_000087, gene-QYE76_028678, gene-QYE76_030060 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G011730 |
| Poaceae | Paspalum vaginatum | 12 | gene-BS78_01G159000, gene-BS78_01G509100, gene-BS78_K023600 ... |
| Poaceae | Sporobolus alterniflorus | 58 | Chr01G023790, Chr01G030010, Chr01G030020, Chr02G006560 ... |
| Poaceae | Thinopyrum elongatum | 6 | Tel2E01G536000, Tel5E01G418900, Tel5E01G419000 ... |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG060430 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-4890 |
| Solanaceae | Lycium barbarum | 88 | gene-LOC132601412, gene-LOC132601432, gene-LOC132601565 ... |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107016424 |
| Tamaricaceae | Reaumuria soongarica | 22 | MSTRG.2861_chr02_-, STRG.10221_chr06_+, STRG.10559_chr07_- ... |