Basic Information
Locus ID:
BH06.2484
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 31365431 | 31368696 | + | BH06.2484 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.97 | 52,817.12 Da | 54.06 | 88.03 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 239 | 287 | 8.74815E-16 | - |
| Pfam | PF12906 | RING-variant domain | 239 | 286 | 5.5E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 235 | 290 | 1.84E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 227 | 294 | 2.5E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 238 | 287 | 1.1E-17 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 231 | 293 | 19.313353 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 449 | 482 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 80 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 80 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 5.79E-106 |
| RefSeq | XP_034590644.1 | uncharacterized protein LOC117852601 [Setaria viridis] | 4.64E-290 |
| TrEMBL | A0A4V6D8V2 | RING-CH-type domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_4G275600v2 PE=4 SV=1 | 1.05E-288 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology