Basic Information
Locus ID:
BH06.2307
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 29645842 | 29652273 | - | BH06.2307 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.51 | 117,539.56 Da | 56.62 | 67.74 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02661 | Peptidase_C19E | 191 | 497 | 1.60006E-160 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 192 | 496 | 8.5E-43 | IPR001394 |
| Pfam | PF01753 | MYND finger | 95 | 132 | 3.2E-9 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 191 | 498 | 5.3E-86 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 92 | 135 | 5.76E-12 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 85 | 139 | 1.3E-13 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 190 | 505 | 1.8E-91 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 192 | 499 | 49.602055 | IPR028889 |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 95 | 132 | 12.492804 | IPR002893 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 95 | 132 | - | IPR002893 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 193 | 208 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 602 | 624 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 938 | 959 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 880 | 904 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 540 | 559 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 888 | 904 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 916 | 959 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 602 | 618 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G24640.1 | ubiquitin-specific protease 19. | 1.63E-179 |
| RefSeq | XP_025811279.1 | ubiquitin carboxyl-terminal hydrolase 19-like [Panicum hallii] | 0 |
| Q9SJA1 | Ubiquitin carboxyl-terminal hydrolase 19 OS=Arabidopsis thaliana OX=3702 GN=UBP19 PE=2 SV=2 | 1.57E-178 | |
| TrEMBL | A0A2S3HHI2 | MYND-type domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_4G060800 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology