Basic Information
Locus ID:
BH06.2036
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 26978366 | 26982475 | - | BH06.2036 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.80 | 78,970.90 Da | 49.12 | 73.83 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08156 | NOP5NT (NUC127) domain | 59 | 115 | 1.6E-6 | IPR012974 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 265 | 286 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 686 | 711 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039844129.1 | probable nucleolar protein 5-1 [Panicum virgatum] | 5.14E-71 |
| TrEMBL | A0A8T0MK92 | DUF4283 domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_9NG326800 PE=4 SV=1 | 2.22E-103 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 53 | AH01.2876, AH01.32, AH02.628, AH03.1625, AH03.1818, AH06.974 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_046977 |
| Poaceae | Oryza coarctata | 1 | Oco17G000100 |
| Poaceae | Paspalum vaginatum | 8 | gene-BS78_01G253900, gene-BS78_02G100600, gene-BS78_K215400 ... |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0302147, Pt_Chr0601454 |
| Poaceae | Sporobolus alterniflorus | 11 | Chr01G023520, Chr01G024930, Chr05G016830, Chr05G025730 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g5044 |