Basic Information
Locus ID:
BH06.2009
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Specific peripheric component of RNA polymerase III which synthesizes small RNAs, such as 5S rRNA and tRNAs
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 26645020 | 26645817 | + | BH06.2009 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.54 | 28,576.53 Da | 56.22 | 69.70 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF05158 | RNA polymerase Rpc34 subunit | 56 | 162 | 1.1E-15 | IPR007832 |
| SUPERFAMILY | SSF46785 | Winged helix DNA-binding domain | 47 | 113 | 1.09E-6 | IPR036390 |
| Gene3D | G3DSA:1.10.10.10 | - | 55 | 119 | 3.2E-7 | IPR036388 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
Gene Ontology
Biological Process:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G23710.1 | DNA binding;DNA-directed RNA polymerases. | 7.57E-35 |
| RefSeq | XP_025812404.1 | DNA-directed RNA polymerase III subunit rpc6-like [Panicum hallii] | 1.84E-91 |
| Q9VD25 | DNA-directed RNA polymerase III subunit RPC6 OS=Drosophila melanogaster OX=7227 GN=Polr3F PE=2 SV=1 | 1.59E-14 | |
| TrEMBL | A0A1E5W3W6 | DNA-directed RNA polymerase III subunit RPC6 OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0006893 PE=3 SV=1 | 1.51E-117 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg36957, jg5577 |
| Aizoaceae | Mesembryanthemum crystallinum | 2 | gene_19264, gene_622 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g121860 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg31325, Sbi_jg57961 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25586 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004474 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl54529, Sgl59870 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000006201, gene:ENSEOMG00000021214 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.4AG0009560, CQ.Regalona.r1.5BG0028630 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30127940 |
| Apiaceae | Apium graveolens | 2 | Ag1G01146, Ag9G01580 |
| Arecaceae | Cocos nucifera | 2 | scaffold010820G000020, scaffold012968G000010 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103724044 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1360.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri14G23041 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT5G23710.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10005351m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g23520.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB02g076810.2N, BniB07g040580.2N |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0311 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno07g12140 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0099s00005.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate01g21500 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG01.463 |
| Plantaginaceae | Plantago ovata | 2 | Pov_00003140, Pov_00013573 |
| Poaceae | Echinochloa crus-galli | 6 | AH06.2225, AH06.2226, BH06.2009, BH06.2010, CH06.2249 ... |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6BG0497900 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.7HG0719600.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_034960 |
| Poaceae | Oryza coarctata | 1 | Oco12G012520 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g40110.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_10G184000, gene-BS78_10G184400 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G029820, Chr05G007490, Chr0G008060 |
| Poaceae | Thinopyrum elongatum | 2 | Tel7E01G637700, Tel7E01G637800 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC7AG052520, gene_TRIDC7BG044950 ... |
| Poaceae | Triticum aestivum | 4 | TraesCS7A02G376000.1, TraesCS7A02G376100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb276730_P001, Zm00001eb356740_P001 ... |
| Poaceae | Zoysia japonica | 1 | nbis-gene-10090 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g30783 |
| Portulacaceae | Portulaca oleracea | 1 | evm.TU.LG09.1261 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc05g03170, gene.Posoc05g03210 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_10_RagTag.1182 |
| Rhizophoraceae | Carallia pectinifolia | 2 | nbisL1-mrna-14684, nbisL1-mrna-6818 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14849 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-21751 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000004l.134 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00004087 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-16335 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-21384 |
| Salicaceae | Populus euphratica | 5 | populus_peu04478, populus_peu04517, populus_peu04536 ... |
| Solanaceae | Lycium barbarum | 3 | gene-LOC132602065, gene-LOC132610636, gene-LOC132621960 |
| Solanaceae | Solanum chilense | 1 | SOLCI001877000 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107026877 |
| Tamaricaceae | Reaumuria soongarica | 2 | STRG.19266_chr07_-, gene_16144 |
| Tamaricaceae | Tamarix chinensis | 2 | TC05G1029, TC09G0526 |
| Zosteraceae | Zostera marina | 1 | Zosma05g05360.v3.1 |