Basic Information
Locus ID:
BH06.1843
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Poly(A) polymerase central domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 24634417 | 24642662 | - | BH06.1843 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.35 | 141,306.44 Da | 50.30 | 85.42 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd05402 | NT_PAP_TUTase | 521 | 676 | 2.04372E-29 | - |
| Pfam | PF14291 | Domain of unknown function (DUF4371) | 1 | 67 | 1.4E-14 | IPR025398 |
| Pfam | PF04928 | Poly(A) polymerase central domain | 482 | 826 | 1.0E-108 | IPR007012 |
| Pfam | PF01909 | Nucleotidyltransferase domain | 555 | 629 | 1.6E-7 | IPR002934 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 828 | 888 | 6.7E-11 | IPR007010 |
| Pfam | PF04926 | Poly(A) polymerase predicted RNA binding domain | 889 | 962 | 2.3E-5 | IPR007010 |
| SUPERFAMILY | SSF81301 | Nucleotidyltransferase | 478 | 674 | 1.24E-48 | IPR043519 |
| SUPERFAMILY | SSF53098 | Ribonuclease H-like | 1 | 259 | 6.14E-15 | IPR012337 |
| SUPERFAMILY | SSF81631 | PAP/OAS1 substrate-binding domain | 677 | 826 | 9.68E-65 | - |
| SUPERFAMILY | SSF55003 | PAP/Archaeal CCA-adding enzyme, C-terminal domain | 827 | 954 | 3.92E-36 | IPR011068 |
| Gene3D | G3DSA:1.10.1410.10 | - | 482 | 824 | 1.5E-154 | - |
| Gene3D | G3DSA:3.30.70.590 | Poly(A) polymerase predicted RNA binding domain | 828 | 944 | 2.0E-25 | - |
| Gene3D | G3DSA:3.30.460.10 | Beta Polymerase, domain 2 | 514 | 670 | 1.5E-154 | IPR043519 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 985 | 1007 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 342 | 378 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 358 | 378 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1013 | 1061 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 960 | 1066 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G32850.7 | nuclear poly(a) polymerase. Encodes a nuclear poly(A) polymerase. Located in the nucleus. | 6.82E-289 |
| RefSeq | XP_025810846.1 | nuclear poly(A) polymerase 4-like isoform X2 [Panicum hallii] | 0 |
| Q8VYW1 | Nuclear poly(A) polymerase 4 OS=Arabidopsis thaliana OX=3702 GN=PAPS4 PE=1 SV=1 | 1.59E-287 | |
| TrEMBL | A0A2T8JCP1 | polynucleotide adenylyltransferase OS=Panicum hallii OX=206008 GN=PAHAL_4G112100 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology