Basic Information
Locus ID:
BH06.165
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Ankyrin repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 1468214 | 1472276 | + | BH06.165 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.27 | 44,312.23 Da | 40.49 | 90.86 | 0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 82 | 178 | 3.6E-17 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 195 | 226 | 4.0E-5 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 14 | 75 | 3.1E-7 | IPR020683 |
| SUPERFAMILY | SSF57850 | RING/U-box | 298 | 358 | 2.94E-7 | - |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 15 | 252 | 8.12E-45 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 10 | 109 | 4.6E-24 | IPR036770 |
| Gene3D | G3DSA:1.25.40.20 | - | 110 | 257 | 4.0E-27 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 294 | 374 | 7.1E-8 | IPR013083 |
| SMART | SM00248 | ANK_2a | 77 | 106 | 0.23 | IPR002110 |
| SMART | SM00248 | ANK_2a | 194 | 223 | 7.1E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 44 | 73 | 3.3E-6 | IPR002110 |
| SMART | SM00248 | ANK_2a | 150 | 179 | 2.9E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 111 | 140 | 1.5 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 111 | 132 | 8.534378 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 44 | 76 | 14.5057 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 77 | 109 | 8.73634 | IPR002110 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 304 | 353 | 9.656702 | IPR001841 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 111 | 132 | 8.54937 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 150 | 181 | 10.709951 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 194 | 220 | 11.346704 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 44 | 75 | 13.601871 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 194 | 226 | 12.075089 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 150 | 182 | 11.674439 | IPR002110 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 319 | 328 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 151 | 166 | 5.2E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 210 | 224 | 5.2E-5 | IPR002110 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 397 | 428 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G07270.1 | XB3 ortholog 3 in Arabidopsis thaliana. | 6.63E-102 |
| RefSeq | XP_025813714.1 | probable E3 ubiquitin-protein ligase XBOS36 [Panicum hallii] | 1.26E-222 |
| Q4JHE0 | Probable E3 ubiquitin-protein ligase XBOS36 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS36 PE=2 SV=1 | 2.48E-158 | |
| TrEMBL | A0A2T7E3K3 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_4G354800 PE=4 SV=1 | 2.84E-221 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology