Basic Information
Locus ID:
BH06.1209
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
PHD-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 12268725 | 12276830 | + | BH06.1209 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.28 | 138,689.91 Da | 56.03 | 69.73 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 963 | 1223 | 1.58843E-88 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 960 | 1218 | 2.0E-50 | IPR001245 |
| Pfam | PF00628 | PHD-finger | 126 | 171 | 1.1E-8 | IPR019787 |
| Pfam | PF13639 | Ring finger domain | 35 | 77 | 5.8E-7 | IPR001841 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 936 | 1218 | 1.89E-77 | IPR011009 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 115 | 173 | 1.77E-13 | IPR011011 |
| SUPERFAMILY | SSF57850 | RING/U-box | 30 | 83 | 1.39E-9 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1033 | 1241 | 9.7E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 931 | 1032 | 9.8E-33 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 16 | 85 | 2.8E-8 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 92 | 178 | 3.8E-13 | IPR013083 |
| SMART | SM00184 | ring_2 | 127 | 170 | 9.4 | IPR001841 |
| SMART | SM00249 | PHD_3 | 126 | 171 | 1.4E-8 | IPR001965 |
| SMART | SM00220 | serkin_6 | 957 | 1229 | 8.5E-37 | IPR000719 |
| SMART | SM00184 | ring_2 | 36 | 76 | 0.0077 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 36 | 77 | 10.822189 | IPR001841 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 124 | 173 | 9.685801 | IPR019787 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 957 | 1234 | 40.527138 | IPR000719 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 54 | 63 | - | IPR017907 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1077 | 1089 | - | IPR008271 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 576 | 604 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 682 | 706 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 605 | 623 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 559 | 626 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 559 | 575 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 808 | 832 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 540 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 266 | - | - |
| Coils | Coil | Coil | 288 | 308 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G15730.2 | Protein kinase superfamily protein. | 2.18E-132 |
| RefSeq | XP_022681927.1 | calcium/calmodulin-regulated receptor-like kinase 2 isoform X1 [Setaria italica] | 1.72E-295 |
| Q9LFV3 | Calcium/calmodulin-regulated receptor-like kinase 2 OS=Arabidopsis thaliana OX=3702 GN=CRLK2 PE=2 SV=1 | 2.1E-131 | |
| TrEMBL | B8B0L9 | PHD and RING finger domain-containing protein 1 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_22555 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg27375 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_13883 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah001318 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_5g113630 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30945, Sbi_jg58329 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg25932 |
| Amaranthaceae | Suaeda aralocaspica | 2 | GOSA_00004797, GOSA_00004798 |
| Amaranthaceae | Suaeda glauca | 1 | Sgl12850 |
| Amaranthaceae | Chenopodium album | 4 | gene:ENSEOMG00000006821, gene:ENSEOMG00000021717 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.5AG0018930, CQ.Regalona.r1.5BG0020340 |
| Anacardiaceae | Pistacia vera | 2 | pistato.v30145520, pistato.v30146700 |
| Apiaceae | Apium graveolens | 1 | Ag3G00766 |
| Arecaceae | Cocos nucifera | 1 | COCNU_01G013980 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103706589 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_05.2240.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri18G17658 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq03G2339 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl03G2476 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno01g04110 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate03g25360 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG10.490 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036220 |
| Poaceae | Echinochloa crus-galli | 3 | AH06.1161, BH06.1209, CH06.1326 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_6AG0517320 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0671880.1 |
| Poaceae | Oryza coarctata | 2 | Oco11G007360, Oco12G007420 |
| Poaceae | Oryza sativa | 1 | LOC_Os06g17280.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_10G119000 |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0102777, Pt_Chr0404252, Pt_Chr0404425, Pt_Chr0502350 ... |
| Poaceae | Sporobolus alterniflorus | 3 | Chr11G017870, Chr14G005570, Chr21G005120 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G386000 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG026820, gene_TRIDC7BG017370 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G212900.1, TraesCS7B02G119600.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb380630_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-45577 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g31749 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG02.98, evm.TU.LG09.1332 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc03g08200 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.Scaffold_11_RagTag.208, evm.TU.Scaffold_11_RagTag.209 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14236 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-10055 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14372 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.255 |
| Rhizophoraceae | Kandelia obovata | 2 | Maker00009987, Maker00010107 |
| Rhizophoraceae | Rhizophora apiculata | 2 | nbisL1-mrna-338, nbisL1-mrna-339 |
| Rhizophoraceae | Rhizophora mangle | 2 | nbisL1-mrna-19024, nbisL1-mrna-19025 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132600198 |
| Solanaceae | Solanum chilense | 1 | SOLCI003178700 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107021212 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.15354_chr06_- |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G1267 |
| Zosteraceae | Zostera marina | 1 | Zosma05g22100.v3.1 |