Basic Information
Locus ID:
BH06.1197
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Shikimate kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 12119938 | 12122515 | - | BH06.1197 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 29,958.25 Da | 40.30 | 90.07 | -0.04 |
Protein Domain:
KEGG Pathway
Pathway:
ko00400 (Phenylalanine, tyrosine and tryptophan biosynthesis)
map00400 (Phenylalanine, tyrosine and tryptophan biosynthesis)
ko01100 (Metabolic pathways)
map01100 (Metabolic pathways)
ko01110 (Biosynthesis of secondary metabolites)
map01110 (Biosynthesis of secondary metabolites)
ko01230 (Biosynthesis of amino acids)
map01230 (Biosynthesis of amino acids)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G26900.1 | shikimate kinase like 1. | 4.05E-51 |
| RefSeq | XP_039802294.1 | probable inactive shikimate kinase like 1, chloroplastic [Panicum virgatum] | 1.5E-158 |
| Q9LW20 | Probable inactive shikimate kinase like 1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=SKL1 PE=2 SV=1 | 3.92E-50 | |
| TrEMBL | A0A8T0UKY1 | Shikimate kinase OS=Panicum virgatum OX=38727 GN=PVAP13_3NG319300 PE=4 SV=1 | 3.4E-157 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg40501 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_25023 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah026889 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_6g130930 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg13667, Sbi_jg52235 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg9610 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00017636 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl33456, Sgl38823 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000003438, gene:ENSEOMG00000005729 ... |
| Amaranthaceae | Chenopodium quinoa | 1 | CQ.Regalona.r1.6BG0021450 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30025200 |
| Apiaceae | Apium graveolens | 1 | Ag7G01334 |
| Arecaceae | Cocos nucifera | 1 | COCNU_15G005480 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103708087 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_09.1444.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G11351 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT3G26900.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10004751m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp2g16020.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB02g067100.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq08G0070 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl08G0076 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g01830 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g05820 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG05.93 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00025028 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb4G22369 |
| Poaceae | Echinochloa crus-galli | 4 | AH05.3781, BH05.3836, BH06.1197, CH05.4048 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0637310, gene-QOZ80_8BG0665840 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0231940.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_063988 |
| Poaceae | Oryza coarctata | 2 | Oco01G000120, Oco02G000160 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g01302.1 |
| Poaceae | Paspalum vaginatum | 4 | gene-BS78_01G233000, gene-BS78_05G042500 ... |
| Poaceae | Puccinellia tenuiflora | 5 | Pt_Chr0104076, Pt_Chr0300618, Pt_Chr0300655, Pt_Chr0300676 ... |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G008920, Chr27G007580 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G148600 |
| Poaceae | Triticum dicoccoides | 3 | gene_TRIDC3AG009900, gene_TRIDC3BG013620 ... |
| Poaceae | Triticum aestivum | 3 | TraesCS3A02G082700.1, TraesCS3B02G097800.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb028930_P002 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-50077 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g25212 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG03.2312, evm.TU.LG17.1362 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g04020 |
| Rhizophoraceae | Bruguiera sexangula | 2 | evm.TU.60369.1, evm.TU.60370.1 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-14196 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-14337 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000005l.228 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00010038 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-370 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-18987 |
| Salicaceae | Populus euphratica | 2 | populus_peu16364, populus_peu38316 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132622505 |
| Solanaceae | Solanum chilense | 1 | SOLCI000002300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107011013 |
| Tamaricaceae | Reaumuria soongarica | 1 | STRG.13953_chr05_+ |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3419 |
| Zosteraceae | Zostera marina | 1 | Zosma01g41310.v3.1 |