Basic Information
Locus ID:
BH06.1190
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
source UniProtKB
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 11952562 | 11968202 | - | BH06.1190 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.72 | 275,874.25 Da | 58.33 | 69.84 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02992 | Transposase family tnp2 | 379 | 491 | 5.8E-32 | IPR004242 |
| Pfam | PF13952 | Domain of unknown function (DUF4216) | 935 | 1000 | 2.2E-11 | IPR025312 |
| Pfam | PF13960 | Domain of unknown function (DUF4218) | 675 | 781 | 2.8E-37 | IPR025452 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 2189 | 2281 | 5.1E-6 | IPR038765 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 79 | 109 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1774 | 1795 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1425 | 1439 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1254 | 1268 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2083 | 2110 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1774 | 1797 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 39 | 58 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 998 | 1023 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 36 | 117 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1423 | 1447 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 2004 | 2050 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1254 | 1274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1924 | 2050 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1947 | 1985 | - | - |
| Coils | Coil | Coil | 1725 | 1759 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039778865.1 | uncharacterized protein LOC120646298 [Panicum virgatum] | 0 |
| TrEMBL | Q2QQL4 | Transposon protein, putative, CACTA, En/Spm sub-class OS=Oryza sativa subsp. japonica OX=39947 GN=LOC_Os12g30630 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 46 | AH01.2619, AH01.3243, AH02.2591, AH02.744, AH03.1151 ... |
| Poaceae | Lolium multiflorum | 13 | gene-QYE76_005385, gene-QYE76_005912, gene-QYE76_006405 ... |