Basic Information
Locus ID:
BH06.1121
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 11155822 | 11160942 | + | BH06.1121 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.63 | 42,804.45 Da | 58.06 | 81.94 | -0.25 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 6.26162E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 365 | 400 | 8.9E-10 | IPR015940 |
| Pfam | PF00627 | UBA/TS-N domain | 166 | 204 | 2.2E-14 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 282 | 337 | 1.6E-19 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 2.7E-18 | IPR000626 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 278 | 343 | 3.01E-20 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 162 | 213 | 1.32E-11 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 350 | 407 | 2.92E-14 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 91 | 1.24E-21 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 3.8E-26 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 357 | 404 | 6.2E-22 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 271 | 338 | 6.9E-25 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 159 | 209 | 5.3E-21 | - |
| SMART | SM00165 | uba_6 | 166 | 206 | 2.6E-5 | IPR015940 |
| SMART | SM00165 | uba_6 | 365 | 402 | 2.2E-9 | IPR015940 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 2.7E-19 | IPR000626 |
| SMART | SM00727 | CBM | 278 | 323 | 4.0E-7 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 408 | 5.7E-112 | IPR004806 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.239443 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 164 | 207 | 12.787865 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 362 | 403 | 14.595147 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 376 | 390 | 3.2E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 391 | 406 | 3.2E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 308 | 330 | 3.2E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 359 | 375 | 3.2E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 119 | 134 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 142 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 218 | 249 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 6.62E-135 |
| RefSeq | XP_025813528.1 | ubiquitin receptor RAD23d-like [Panicum hallii] | 3.85E-219 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 7.54E-133 | |
| TrEMBL | A0A2S3HL08 | Ubiquitin receptor RAD23 OS=Panicum hallii OX=206008 GN=PAHAL_4G281300 PE=3 SV=1 | 8.71E-218 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology