Basic Information
Locus ID:
BH06.1094
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Putative gypsy type transposon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 10683760 | 10687021 | - | BH06.1094 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.97 | 76,988.49 Da | 48.40 | 78.47 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| MobiDBLite | mobidb-lite | consensus disorder prediction | 322 | 336 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 244 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 347 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 287 | 301 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 215 | 232 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 10 | 33 | - | - |
| Coils | Coil | Coil | 465 | 531 | - | - |
| Coils | Coil | Coil | 581 | 608 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_034570691.1 | uncharacterized protein LOC117835459 [Setaria viridis] | 1.05E-18 |
| TrEMBL | A0A3L6RZY1 | Retrotransposon protein, putative, Ty3-gypsy subclass OS=Panicum miliaceum OX=4540 GN=C2845_PM09G11190 PE=4 SV=1 | 3.01E-24 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||