Basic Information
Locus ID:
BH06.1044
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH06 | 10091314 | 10092649 | + | BH06.1044 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.43 | 42,065.31 Da | 40.94 | 96.07 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 43 | 84 | 3.05312E-20 | - |
| Pfam | PF04564 | U-box domain | 39 | 110 | 2.4E-18 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 28 | 115 | 1.19E-28 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 181 | 375 | 5.76E-14 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 140 | 399 | 2.7E-16 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 22 | 116 | 4.5E-28 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 42 | 105 | 1.1E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 38 | 112 | 33.013916 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 2.21E-63 |
| RefSeq | XP_034589630.1 | U-box domain-containing protein 21-like [Setaria viridis] | 7.49E-222 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 2.14E-62 | |
| TrEMBL | A0A4U6UYQ0 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_4G109100v2 PE=4 SV=1 | 1.69E-220 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology