Basic Information
Locus ID:
BH05.891
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 7616858 | 7621148 | - | BH05.891 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.32 | 79,064.95 Da | 59.69 | 45.69 | -1.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 562 | 588 | 7.0E-5 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 487 | 516 | 1.7E-5 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 479 | 518 | 4.12E-13 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 552 | 589 | 2.98E-10 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 484 | 518 | 6.9E-14 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 558 | 589 | 1.9E-9 | - |
| SMART | SM00547 | zf_4 | 488 | 514 | 9.4E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 561 | 585 | 8.7E-8 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 486 | 517 | 9.64205 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 559 | 588 | 9.675926 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 563 | 582 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 490 | 511 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 519 | 551 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 306 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 661 | 738 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 640 | 738 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 239 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 389 | 468 | - | - |
| Coils | Coil | Coil | 603 | 623 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50300.2 | - | 2.26E-70 |
| RefSeq | XP_004960353.1 | transcription initiation factor TFIID subunit 15 [Setaria italica] | 5.6E-113 |
| Q9AST1 | Transcription initiation factor TFIID subunit 15 OS=Arabidopsis thaliana OX=3702 GN=TAF15 PE=1 SV=1 | 4.38E-69 | |
| TrEMBL | K3Z6U4 | Transcription initiation factor TFIID subunit 15 OS=Setaria italica OX=4555 GN=101775629 PE=4 SV=1 | 1.27E-111 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||