Basic Information
Locus ID:
BH05.877
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Short Name:
UPL4
Description:
Domain Homologous to E6-AP Carboxyl Terminus with
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 7477803 | 7484365 | + | BH05.877 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.44 | 150,342.13 Da | 46.03 | 92.68 | -0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00078 | HECTc | 974 | 1355 | 3.9574E-101 | IPR000569 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1020 | 1357 | 1.3E-76 | IPR000569 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 966 | 1350 | 1.44E-84 | IPR035983 |
| SUPERFAMILY | SSF48371 | ARM repeat | 27 | 432 | 5.76E-26 | IPR016024 |
| Gene3D | G3DSA:1.25.10.10 | - | 23 | 445 | 2.7E-31 | IPR011989 |
| Gene3D | G3DSA:3.30.2160.10 | Hect, E3 ligase catalytic domain | 1104 | 1201 | 2.4E-36 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 973 | 1236 | 2.4E-36 | - |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1242 | 1355 | 1.6E-27 | - |
| SMART | SM00185 | arm_5 | 169 | 207 | 24.0 | IPR000225 |
| SMART | SM00185 | arm_5 | 212 | 257 | 20.0 | IPR000225 |
| SMART | SM00119 | hect_3 | 981 | 1357 | 1.5E-79 | IPR000569 |
| SMART | SM00185 | arm_5 | 86 | 127 | 120.0 | IPR000225 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 998 | 1357 | 59.497498 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 696 | 725 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 943 | 970 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 697 | 725 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G02880.1 | ubiquitin-protein ligase 4. encodes a ubiquitin-protein ligase containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis. | 6.77E-233 |
| RefSeq | XP_034584351.1 | E3 ubiquitin-protein ligase UPL4-like isoform X1 [Setaria viridis] | 0 |
| Q9LYZ7 | E3 ubiquitin-protein ligase UPL4 OS=Arabidopsis thaliana OX=3702 GN=UPL4 PE=3 SV=1 | 6.57E-232 | |
| TrEMBL | A0A1E5UXM8 | HECT-type E3 ubiquitin transferase OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0021310 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology