Basic Information
Locus ID:
BH05.776
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 6549093 | 6550352 | + | BH05.776 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.94 | 43,605.96 Da | 73.59 | 59.00 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 221 | 262 | 1.72844E-23 | - |
| Pfam | PF06547 | Protein of unknown function (DUF1117) | 290 | 400 | 2.3E-42 | IPR010543 |
| Pfam | PF13639 | Ring finger domain | 220 | 262 | 1.4E-10 | IPR001841 |
| Pfam | PF14369 | zinc-ribbon | 13 | 57 | 8.0E-13 | IPR039525 |
| SUPERFAMILY | SSF57850 | RING/U-box | 201 | 268 | 2.43E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 187 | 268 | 2.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 221 | 261 | 6.0E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 221 | 262 | 12.061441 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 383 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 403 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 369 | 419 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39720.1 | RING-H2 finger C2A. Encodes a putative RING-H2 finger protein RHC2a. | 1.95E-74 |
| RefSeq | XP_004960533.1 | E3 ubiquitin-protein ligase RDUF2-like [Setaria italica] | 3.54E-204 |
| O22283 | Probable E3 ubiquitin-protein ligase RHC2A OS=Arabidopsis thaliana OX=3702 GN=RHC2A PE=2 SV=1 | 1.89E-73 | |
| TrEMBL | A0A4U6VAB6 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_3G067666v2 PE=4 SV=1 | 8.0E-203 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology