halophFGD

Basic Information

Locus ID: BH05.741

Species & Taxonomic ID: Echinochloa crus-galli & 90397

Genome Assembly: GWHBDNR00000000

Description:

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
BH05	6295679	6308651	+	BH05.741

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
7.37	247,148.94 Da	49.97	73.01	-0.57

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
Pfam	PF14111	Domain of unknown function (DUF4283)	786	908	3.1E-10	IPR025558
SUPERFAMILY	SSF56219	DNase I-like	1398	1467	1.32E-5	IPR036691
SUPERFAMILY	SSF81383	F-box domain	1779	1823	9.81E-8	IPR036047
SUPERFAMILY	SSF52047	RNI-like	1928	2128	1.41E-9	-
Gene3D	G3DSA:3.80.10.10	Ribonuclease Inhibitor	1911	2142	3.9E-8	IPR032675
ProSiteProfiles	PS50181	F-box domain profile.	1780	1816	8.59666	IPR001810
MobiDBLite	mobidb-lite	consensus disorder prediction	513	638	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	961	989	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	611	638	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	479	498	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	667	695	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1	71	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	31	47	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	960	1005	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1110	1235	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	1113	1228	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	51	68	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	555	585	-	-
Coils	Coil	Coil	1549	1583	-	-

Gene Ontology

Molecular Function:

GO:0005515 (protein binding)

Best hit

Source	Best Hit ID	Description	E-value
TAIR	AT3G49030.2	FBD, F-box and Leucine Rich Repeat domains containing protein.	1.43E-8
RefSeq	XP_034587483.1	uncharacterized protein LOC117849872 isoform X3 [Setaria viridis]	1.22E-288
Swiss-Prot	Q9SMU0	Putative F-box/FBD/LRR-repeat protein At3g49030 OS=Arabidopsis thaliana OX=3702 GN=At3g49030 PE=4 SV=1	1.53E-7
TrEMBL	A0A4U6V6B7	F-box domain-containing protein OS=Setaria viridis OX=4556 GN=SEVIR_3G070800v2 PE=4 SV=1	2.77E-287

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	38	AH01.2411, AH01.4053, AH02.2969, AH03.2983, AH03.3482 ... AH04.2168, AH06.1173, AH08.999, AH09.537, BH03.2058, BH04.426, BH05.3451, BH05.741, BH08.1003, CH01.3769, CH01.5060, CH02.2241, CH02.2449, CH03.1722, CH03.3505, CH03.4729, CH03.8, CH04.1398, CH04.2284, CH04.622, CH05.1139, CH05.2408, CH05.2903, CH05.3274, CH05.4118, CH06.1882, CH08.2427, CH08.2782, CH08.766, CH09.130, CH09.3180, CH09.404, CH09.641
Poaceae	Hordeum vulgare	4	HORVU.MOREX.r3.1HG0033440.1.CDS1 ... HORVU.MOREX.r3.4HG0412720.1.CDS1, HORVU.MOREX.r3.5HG0425570.1.CDS1, HORVU.MOREX.r3.7HG0667800.1.CDS1
Poaceae	Lolium multiflorum	11	gene-QYE76_001489, gene-QYE76_002749, gene-QYE76_005337 ... gene-QYE76_006069, gene-QYE76_015759, gene-QYE76_026176, gene-QYE76_026545, gene-QYE76_034785, gene-QYE76_039367, gene-QYE76_066465, gene-QYE76_067977
Poaceae	Oryza coarctata	11	Oco01G004580, Oco02G011290, Oco04G017380, Oco06G018880 ... Oco07G011460, Oco09G008340, Oco11G000620, Oco13G002610, Oco16G007020, Oco22G009350, Oco24G004440
Poaceae	Oryza sativa	2	LOC_Os04g10890.1, LOC_Os04g47030.1
Poaceae	Paspalum vaginatum	21	gene-BS78_01G375300, gene-BS78_02G114900, gene-BS78_K171700 ... gene-BS78_03G065900, gene-BS78_03G158000, gene-BS78_04G086200, gene-BS78_04G324700, gene-BS78_05G028000, gene-BS78_05G093400, gene-BS78_05G171000, gene-BS78_05G212100, gene-BS78_07G089300, gene-BS78_07G152400, gene-BS78_08G164700, gene-BS78_09G111900, gene-BS78_10G109100, gene-BS78_10G157000, gene-BS78_K215100, gene-BS78_K261200, gene-BS78_K284800, gene-BS78_K333900
Poaceae	Puccinellia tenuiflora	8	Pt_Chr0100538, Pt_Chr0103384, Pt_Chr0200373, Pt_Chr0305788 ... Pt_Chr0504634, Pt_Chr0505848, Pt_Chr0602815, Pt_Chr0604111
Poaceae	Sporobolus alterniflorus	104	Chr01G021880, Chr01G022060, Chr02G016330, Chr02G017390 ... Chr02G020590, Chr02G025200, Chr03G003810, Chr03G006920, Chr03G008040, Chr03G012410, Chr03G013380, Chr04G009130, Chr04G015410, Chr05G007550, Chr05G021150, Chr05G024850, Chr05G030530, Chr06G000770, Chr06G019070, Chr06G019080, Chr06G023450, Chr06G024050, Chr06G025660, Chr06G031580, Chr07G008660, Chr07G016630, Chr07G018320, Chr07G018470, Chr07G023170, Chr08G013330, Chr08G018100, Chr09G007850, Chr09G011380, Chr0G006060, Chr10G013700, Chr10G020240, Chr11G016410, Chr11G018670, Chr11G018680, Chr12G015200, Chr12G026390, Chr12G033140, Chr13G004490, Chr13G014980, Chr13G018070, Chr14G006840, Chr14G007730, Chr14G009620, Chr15G007310, Chr15G016590, Chr15G018160, Chr16G002280, Chr16G003750, Chr16G012450, Chr16G013450, Chr17G005410, Chr17G006200, Chr17G014260, Chr18G004510, Chr18G007630, Chr20G004680, Chr20G005800, Chr20G006250, Chr20G009020, Chr21G011550, Chr21G012860, Chr22G003720, Chr22G003730, Chr22G011380, Chr22G011930, Chr22G012430, Chr23G015670, Chr23G017930, Chr23G019440, Chr24G005360, Chr24G007250, Chr24G008440, Chr25G009660, Chr25G014270, Chr25G014330, Chr25G015030, Chr26G003910, Chr27G001640, Chr27G001650, Chr27G001920, Chr27G003410, Chr27G007890, Chr28G006730, Chr28G009700, Chr29G006940, Chr29G011740, Chr29G011750, Chr30G010560, Chr30G011210, Chr30G015190, Chr30G015840, Chr30G015850, Chr31G002250, Chr31G002260, Chr31G003120, Chr31G003160, Chr31G004970, Chr31G005210, Chr31G006250
Poaceae	Triticum aestivum	2	TraesCS1D02G347600.1.cds1, TraesCS3A02G333800.1
Poaceae	Zea mays	29	Zm00001eb029240_P001, Zm00001eb050450_P001 ... Zm00001eb054780_P001, Zm00001eb059440_P001, Zm00001eb087850_P001, Zm00001eb091020_P001, Zm00001eb099660_P001, Zm00001eb107790_P001, Zm00001eb112050_P001, Zm00001eb112190_P002, Zm00001eb118380_P001, Zm00001eb118390_P001, Zm00001eb131610_P001, Zm00001eb133620_P001, Zm00001eb158410_P001, Zm00001eb195810_P002, Zm00001eb235030_P001, Zm00001eb235540_P001, Zm00001eb250840_P001, Zm00001eb261750_P001, Zm00001eb261780_P001, Zm00001eb292070_P001, Zm00001eb311130_P001, Zm00001eb324580_P001, Zm00001eb356800_P001, Zm00001eb357400_P001, Zm00001eb388420_P001, Zm00001eb408840_P001, Zm00001eb416460_P001