Basic Information
Locus ID:
BH05.691
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 5894617 | 5895396 | + | BH05.691 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.94 | 26,275.04 Da | 66.86 | 78.65 | 0.02 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 164 | 207 | 3.5E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 158 | 213 | 1.89E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 122 | 212 | 4.7E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 165 | 206 | 6.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 165 | 207 | 11.913911 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 222 | 259 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 228 | 243 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 26 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 27 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72200.1 | RING/U-box superfamily protein. | 5.6E-17 |
| RefSeq | XP_025805760.1 | RING-H2 finger protein ATL40-like [Panicum hallii] | 3.53E-105 |
| Q84W40 | RING-H2 finger protein ATL11 OS=Arabidopsis thaliana OX=3702 GN=ATL11 PE=2 SV=2 | 5.55E-16 | |
| TrEMBL | A0A2T7E6U3 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G076700 PE=4 SV=1 | 6.66E-105 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH05.639, BH05.691, CH05.795 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0401660, gene-QOZ80_5BG0450220 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0031470.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_010423, gene-QYE76_010463, gene-QYE76_051207 ... |
| Poaceae | Oryza coarctata | 2 | Oco09G004480, Oco10G004290 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g11490.1, LOC_Os05g11860.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G083400 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr12G025740, Chr18G004300, Chr22G012960 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G230700, Tel3E01G248200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG018190, gene_TRIDC1BG022260 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS1A02G126200.1.cds1, TraesCS1B02G145400.1.cds1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17972, nbis-gene-41783 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27850 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000023l.13 |