Basic Information
Locus ID:
BH05.628
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 5291863 | 5294779 | - | BH05.628 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.44 | 26,624.89 Da | 44.38 | 67.86 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF02309 | AUX/IAA family | 31 | 239 | 3.7E-75 | IPR033389 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 139 | 229 | 4.37E-22 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 137 | 242 | 2.1E-42 | - |
| ProSiteProfiles | PS51745 | PB1 domain profile. | 142 | 230 | 27.856916 | IPR000270 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 63 | 89 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G29080.1 | phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) | 2.66E-68 |
| RefSeq | XP_025805301.1 | auxin-responsive protein IAA17-like [Panicum hallii] | 5.33E-146 |
| Q75GB1 | Auxin-responsive protein IAA17 OS=Oryza sativa subsp. japonica OX=39947 GN=IAA17 PE=2 SV=1 | 6.57E-128 | |
| TrEMBL | A0A2T7E6M0 | Auxin-responsive protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G070600 PE=3 SV=1 | 4.21E-145 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology