Basic Information
Locus ID:
BH05.487
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 4097551 | 4099316 | - | BH05.487 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.06 | 45,790.09 Da | 42.17 | 71.97 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 372 | 420 | 9.3E-9 | IPR000504 |
| SUPERFAMILY | SSF81383 | F-box domain | 7 | 53 | 5.63E-7 | IPR036047 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 364 | 420 | 1.76E-13 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 344 | 424 | 5.8E-13 | IPR012677 |
| Gene3D | G3DSA:1.20.1280.50 | - | 14 | 55 | 2.7E-7 | - |
| SMART | SM00360 | rrm1_1 | 371 | 426 | 0.0019 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 370 | 426 | 12.287449 | IPR000504 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G24770.1 | 31-kDa RNA binding protein. Encodes a chloroplast RNA-binding protein. A substrate of the type III effector HopU1 (mono-ADP-ribosyltransferase). Required for editing and stability of specific chloroplast mRNAs. | 2.49E-10 |
| RefSeq | XP_025805700.1 | uncharacterized protein LOC112884507 [Panicum hallii] | 4.52E-142 |
| P19683 | 31 kDa ribonucleoprotein, chloroplastic OS=Nicotiana sylvestris OX=4096 PE=1 SV=1 | 7.02E-10 | |
| TrEMBL | A0A1E5V4M8 | RRM domain-containing protein OS=Dichanthelium oligosanthes OX=888268 GN=BAE44_0018868 PE=4 SV=1 | 4.07E-189 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology