Basic Information
Locus ID:
BH05.448
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 3716883 | 3719934 | + | BH05.448 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.19 | 79,702.75 Da | 37.70 | 80.36 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14223 | gag-polypeptide of LTR copia-type | 635 | 719 | 4.6E-14 | - |
| Pfam | PF13961 | Domain of unknown function (DUF4219) | 571 | 597 | 4.2E-10 | IPR025314 |
| Pfam | PF14624 | VWA / Hh protein intein-like | 449 | 481 | 8.0E-6 | IPR032838 |
| Pfam | PF13768 | von Willebrand factor type A domain | 98 | 251 | 2.1E-17 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 97 | 267 | 7.07E-28 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 98 | 267 | 5.0E-36 | IPR036465 |
| SMART | SM00327 | VWA_4 | 96 | 268 | 3.1E-17 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 98 | 270 | 15.782561 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 498 | 521 | - | - |
| Coils | Coil | Coil | 703 | 723 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G54780.1 | Zinc finger (C3HC4-type RING finger) family protein. | 1.68E-47 |
| RefSeq | XP_045084182.1 | uncharacterized protein LOC123493929 [Aegilops tauschii subsp. strangulata] | 3.6E-235 |
| TrEMBL | A0A453JGN1 | VWFA domain-containing protein OS=Aegilops tauschii subsp. strangulata OX=200361 PE=4 SV=1 | 8.15E-234 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 8 | AH05.388, AH05.865, AH05.867, BH01.4317, BH01.4319, BH05.448 ... |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_9AG0670800, gene-QOZ80_9AG0675400 ... |
| Poaceae | Lolium multiflorum | 5 | gene-QYE76_039716, gene-QYE76_058228, gene-QYE76_058230 ... |
| Poaceae | Oryza coarctata | 2 | Oco09G001520, Oco09G001530 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0605438, Pt_Chr0605787 |
| Poaceae | Zoysia japonica | 4 | nbis-gene-18273, nbis-gene-53961, nbis-gene-53963 ... |
| Poaceae | Zoysia macrostachya | 1 | Zma_g17598 |