Basic Information
Locus ID:
BH05.447
Species & Taxonomic ID:
Echinochloa crus-galli & 90397
Genome Assembly:
GWHBDNR00000000
Description:
von Willebrand factor type A domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| BH05 | 3711892 | 3713592 | - | BH05.447 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.77 | 56,142.23 Da | 34.44 | 87.08 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14624 | VWA / Hh protein intein-like | 402 | 472 | 6.5E-13 | IPR032838 |
| Pfam | PF00092 | von Willebrand factor type A domain | 59 | 214 | 1.7E-16 | IPR002035 |
| SUPERFAMILY | SSF53300 | vWA-like | 56 | 209 | 8.9E-25 | IPR036465 |
| Gene3D | G3DSA:3.40.50.410 | von Willebrand factor, type A domain | 59 | 226 | 2.5E-34 | IPR036465 |
| SMART | SM00327 | VWA_4 | 57 | 226 | 4.9E-18 | IPR002035 |
| ProSiteProfiles | PS50234 | VWFA domain profile. | 59 | 229 | 16.08194 | IPR002035 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 315 | 347 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G08050.1 | Zinc finger (C3HC4-type RING finger) family protein. | 5.77E-38 |
| RefSeq | XP_039798718.1 | E3 ubiquitin-protein ligase WAV3-like [Panicum virgatum] | 8.48E-272 |
| Q9LTA6 | E3 ubiquitin-protein ligase WAV3 OS=Arabidopsis thaliana OX=3702 GN=WAV3 PE=1 SV=1 | 2.8E-13 | |
| TrEMBL | A0A8T0TZN3 | VWFA domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_3NG054000 PE=4 SV=1 | 1.92E-270 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology